Package: ct
Type: Package
Title: Camera Trap Data Management and Multi-Method Ecological Analysis
Version: 0.5.0
Date: 2026-10-20
Imports: activity (>= 1.3.4), dplyr (>= 1.1.4), camtrapdp, cli (>=
        3.6.3), Distance (>= 2.0.0), ggplot2 (>= 3.5.2), lubridate,
        magrittr (>= 2.0.3), methods, nloptr, overlap (>= 0.3.9), rlang
        (>= 1.1.5), sbd (>= 0.1.0), tibble, tidyr (>= 1.3.1),
        tidyselect, Rcpp (>= 1.0.8)
Authors@R: c(
    person(given = "Stanislas Mahussi", family = "Gandaho", 
           email = "stangandaho@gmail.com", role = c("aut", "cre"),
           comment = c(ORCID = "0009-0003-4969-1252")
           ),
    person(given = "Pablo", family = "Palencia", 
           email = "palencia.pablo.m@gmail.com", role = c("ctb", "rev"),
           comment = c(ORCID = "0000-0002-2928-4241")
           ),
    person("R Consortium", role = "fnd")
    )
Maintainer: Stanislas Mahussi Gandaho <stangandaho@gmail.com>
Description: Tools for the complete camera trap data workflow in
        wildlife monitoring and ecological research. Reads and edits
        media metadata, filters independent detections, and
        standardises records for analysis. Measures diel activity and
        overlap (Ridout and Linkie (2009)
        <doi:10.1198/jabes.2009.08038>), directed short-term
        association between species with an encounter-response model
        (Hawkes (1971) <doi:10.1093/biomet/58.1.83>), seasonal shifts
        in activity, spatial coverage of detections, and species
        diversity. Estimates density or abundance of unmarked
        populations with several methods, including the random
        encounter model, camera trap distance sampling, time-to-event,
        space-to-event, instantaneous sampling, and the random
        encounter and staying-time model (see Rowcliffe et al. (2008)
        <doi:10.1111/j.1365-2664.2008.01473.x>, Howe et al. (2017)
        <doi:10.1111/2041-210X.12790>, Moeller et al. (2018)
        <doi:10.1002/ecs2.2331>, and Nakashima et al. (2018)
        <doi:10.1111/1365-2664.13059>).
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.3.2
Roxygen: list(markdown = TRUE)
Suggests: assertr, iNEXT (>= 3.0.2), httr2, glmmTMB, kableExtra (>=
        1.4.0), knitr (>= 1.50), leaflet (>= 2.2.2), lme4, MASS,
        MCMCvis, msm, nimble, coda, progress, rmarkdown, sf, shiny (>=
        1.10.0), terra, testthat (>= 3.0.0), vegan (>= 2.6-6.1), xml2
Config/testthat/edition: 3
URL: https://stangandaho.github.io/ct/
BugReports: https://github.com/stangandaho/ct/issues
Depends: R (>= 3.5)
Config/Needs/website: rmarkdown
LinkingTo: Rcpp
Config/pak/sysreqs: libabsl-dev cmake libgdal-dev gdal-bin libgeos-dev
        make libicu-dev libjq-dev libuv1-dev libxml2-dev libssl-dev
        libproj-dev libsqlite3-dev libudunits2-dev libnode-dev
        libx11-dev
Repository: https://stangandaho.r-universe.dev
Date/Publication: 2026-10-31 17:46:32 UTC
RemoteUrl: https://github.com/stangandaho/ct
RemoteRef: HEAD
RemoteSha: 046e3849fe576e884a6ae00c3a340f20c17d3071
NeedsCompilation: yes
Packaged: 2026-10-31 18:48:11 UTC; root
Author: Stanislas Mahussi Gandaho [aut, cre] (ORCID:
    <https://orcid.org/0009-0003-4969-1252>),
  Pablo Palencia [ctb, rev] (ORCID:
    <https://orcid.org/0000-0002-2928-4241>),
  R Consortium [fnd]